Taste / index 01
References for thinking about biology.
A provisional shelf of papers, labs, institutes, and public scientific tools. Every seed below is marked for my confirmation before it becomes a personal endorsement.
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[Mahmoud: confirm] Protein Data Bank
Site · experimentally determined molecular structures
[Mahmoud: confirm] UniProt
Site · protein sequence and function knowledge
[Mahmoud: confirm] Immune Epitope Database
Site · curated immune-epitope data
[Mahmoud: confirm] EMBL–EBI
Institute · open tools and biological data
[Mahmoud: confirm] Wellcome Sanger Institute
Institute · genomics and biological discovery
[Mahmoud: confirm] Ragon Institute
Institute · immune-system research across disciplines
[Mahmoud: confirm] Broad Institute
Institute · genomics, biology, and medicine
[Mahmoud: confirm] Institute for Protein Design
Lab · computational protein design
[Mahmoud: confirm] Speaking the language of antibodies
Paper · Nature, 2024
[Mahmoud: confirm] Ankh: Optimized Protein Language Model
Paper · arXiv, 2023
SEEDS / UNCONFIRMED / LAST SORTED 2026